Classloader leaks V – Common mistakes and Known offenders

A couple of years ago, there was an article on the Confluence site of the Spring framework written by Magnus Alvestad, titled “Memory leaks where the classloader cannot be garbage
collected” (originally located here/here). Apart from a short description of the problem with classloader leaks, it also contained a list of known offenders; practices and third party libraries known to cause classloader leaks, either by incorrect use or as a bug.

Even though not by far exhaustive, an article like that was a good reference – a place to start looking if you experienced java.lang.OutOfMemoryError: PermGen space. Unfortunately it seems that page is not available any more. My hope for this post is that it may serve that purpose instead. For that to come true, I also need your help. If you know of a public Java library that does, in a current or previous version, cause classloader leaks, please comment on this post. I intend to keep the list updated. (Please note that this is not an invitation for support requests, asking me whether a particular library does leak. I want you to report leaks that are confirmed, either by yourself or that there is an online bug report / mailing list discussion. References are preferrable!)

Common mistakes

Let’s start with the leaks that aren’t necessarily bugs, but failure to follow guidelines or best practice. It may also be API:s that have the potential to cause classloader leaks, while they also provide a means to avoid them.

Uncleared ThreadLocals

As we talked about in the previous post, you should always call remove() on a ThreadLocal in a finally block.

Unstopped threads

In part III of this series we talked about the importance of making sure threads started within your web app stop executing when the application is redeployed.

JDBC driver included in WAR

Your JDBC driver will be registered in java.sql.DriverManager, which means that if you include your JDBC driver inside your web application, there will be a reference to your webapps classloader from system classes (see part II). The simple solution is to put JDBC driver on server level instead, but you can also deregister the driver at application shutdown.

Logging frameworks

Logging frameworks such as Apache Commons Logging (ACL) – formerly Jakarta Commons Logging (JCL) – log4j and java.util.logging (JUL) will cause classloader leaks under some circumstances.

Apache Commons Logging will cause trouble if the logging framework is supplied outside of the web application, such as within the Application Server. In such a case, you need to add a bit of cleanup code to the ServletContextListener we’ve talked about:

org.apache.commons.logging.LogFactory.release(
  Thread.currentThread().getContextClassLoader());

or

org.apache.commons.logging.LogFactory.release(this.getClass().getClassLoader());

There is an article about this on the Apache Commons Wiki. It is also mentioned in the guide and FAQ.

When it comes to log4j, you can achieve the same kind of leak with some configurations. I’m not sure if calling org.apache.log4j.LogManager.shutdown() in the cleanup ServletContextListener helps, but it’s probably a good idea anyway, at least if there is only a single web application running on the server.

As for java.util.logging, it will always be outside the web application, since it is part of the JDK. With it you can cause classloader leaks by creating custom log Levels inside your web app. This is what Frank Kieviet uses as example in his blog post on classloader leaks.

There is also a thorough article about the problem with logging frameworks and classloaders here. As a general recommendation, SLF4J supposedly helps preventing at least some of these problems.

Bean instrospection

The Java Bean introspection has a cache with strong references, that need to be cleared by calling

java.beans.Introspector.flushCaches();

in the cleanup ServletContextListener. If you don’t want to create your own, you can use org.springframework.web.util.IntrospectorCleanupListener from the Spring framework.

Custom property editor

If a property editor loaded within the web application (or a property editor for a class loaded in the web application) is registered by calling java.beans.PropertyEditorManager.registerEditor() it needs to be deregistered at application shutdown, or it will cause classloader leaks. Deregistering can be achieved by calling java.beans.PropertyEditorManager.registerEditor() again with the same targetType but null as the second argument (editorClass).

Custom default java.net.Authenticator

Custom java.net.Authenticator loaded in your web application and registered with java.net.Authenticator.setDefault() must be unregistered at application shutdown, or it will cause leaks.

Custom default java.net.ProxySelector

Custom java.net.ProxySelector loaded in your web application and registered with java.net.ProxySelector.setDefault() must be unregistered at application shutdown, or it will cause leaks.

Custom java.security.Provider

Custom java.security.Provider loaded in your web application and registered with java.security.Security.addProvider() must be unregistered with java.security.Security.removeProvider() at application shutdown, or it will cause leaks.

Custom MBean

Custom MBeans registered in the MBeanServer (ManagementFactory.getPlatformMBeanServer().registerMBean()) needs to be unregistered at application shutdown, or they will cause leaks.

Undestroyed custom ThreadGroup

ThreadGroups are in a hierarchy with the “system” ThreadGroup at the top. Children are added to a parent upon creation, and parents will keep a reference to it’s child ThreadGroups, until the child is destroyed by a call to destroy(). This means that if java.lang.ThreadGroup is subclassed, and that subclass is loaded inside your application and instantiated, then there will be a strong reference to your applications classloader until that ThreadGroup is destroy()ed.

Known offenders

Among the API:s that are known to cause classloader leaks, without providing a proper cleanup/workaround, are a couple of JDK classes with the habit of keeping a reference to the contextClassLoader of the Thread that first calls them. The solution in this case is to make sure these methods are called once, with some other classloader – such as ClassLoader.getSystemClassLoader() – as contextClassLoader. Preferrably we put this code in the contextInitialized() method of our ServletContextListener. See Tomcats JreMemoryLeakPreventionListener class for more details.

Apache ActiveMQ

Apache ActiveMQ registers org.apache.activemq.util.StringArrayEditor as a property editor for String[] in java.beans.PropertyEditorManager (by a static block in org.apache.activemq.util.IntrospectionSupport), but provide no means of deregistering it. Reported here.

Apache Axis

Apache Axis leaks classloaders because of uncleared ThreadLocal, at least version 1.4, as we saw in part IV.

Apache Batik

Some versions of Batik SVG Toolkit (at least 1.5 beta 4 up to 1.7), leaves unterminated threads, as we saw in part III. It has been reported but at the time of this writing there is still no fix.

Apache Commons Pool / DBCP

Apache Commons Pool, which is used by Apache Commons DBCP, has a feature to automatically evict idle objects, which use a background thread running in the applications classloader. Earlier versions suffered from a bug, that did not allow the thread to be stopped properly (missing synchronization or volatile, like talked about in part III). See this blog post. It seem that in recent versions you can simply call org.apache.commons.pool2.impl.GenericObjectPool.close() at application shutdown. You can also turn off the idle evict feature at any time by calling org.apache.commons.pool2.impl.GenericObjectPool.
setTimeBetweenEvictionRunsMillis()
with a negative value.

Apache CXF

Apache CXF may set org.apache.cxf.transport.http.CXFAuthenticator as the default java.net.Authenticator; see above. (Thanks to Arild Froeland for the report!) Reported here.

Bean Validation API / JSR 303

The Bean Validation API / JSR 303 will leak classloaders, if the API is at the application server level while the implementation, such as Hibernate Validator, is included inside your web application. More details in part II.

CGLIB / Hibernate / Spring / JBoss / Apache Geronimo

CGLIB, used by Hibernate, Spring etc, has had a bug in it’s proxy code, with uncleared ThreadLocals (see part IV). Bug report on Hibernate. Bug reports on Spring. Bug report on JBoss. Bug report on Apache Geronimo.

dom4j

dom4j has uncleared ThreadLocals (see part IV). Reported here. That bug report is still “open”, but on other parts of the net report it to be fixed in 1.6.1.

com.sun.jndi.ldap.LdapPoolManager

The contextClassLoader of the thread loading the com.sun.jndi.ldap.LdapPoolManager class may be kept from being garbage collected, since it will start a new thread if the system property com.sun.jndi.ldap.connect.pool.timeout is set to a value greater than 0.

EclipseLink

The EclipseLink JPA implementation has had classloader leaks. According to this bug report fixed since version 1.1.

GeoTools

GeoTools is reported here to have unending thread. As of version 2.6.2 you should call org.geotools.util.WeakCollectionCleaner.exit() in your cleanup.

Google Guice

Googles IoC/DI framework Guice seems to have had several classloader leaks, at least some of which are not resolved at the time of this writing. Reports here, here and here.

Groovy

Groovy can cause classloader leaks according to this bug report, which is still “open”.

Hessian

Hessian binary web service protocol has suffered from uncleared ThreadLocals (see part IV). Bug reported here. Should be fixed since version 4.0.23 shipped with Resin.

iCal4J

iCal4J seems to have sufferend from uncleared ThreadLocals (see part IV). More info here.

Infinispan

Infinispan has had a number of reports of uncleared ThreadLocals. Two examples here and here, but there are more if you look at “Similar Issues” or search Jira yourself.

IntrospectionUtils

IntrospectionUtils copied from Tomcat (org.apache.tomcat.util.IntrospectionUtils) to Apache Commons Modeler (org.apache.commons.modeler.util.IntrospectionUtils) keeps a strong reference cache. After this was reported as a bug, a static clear() method has been added. Make sure to call it on application shutdown.

Java Advanced Imaging (JAI)

Java Advanced Imaging (JAI) library can cause classloader leaks with registered shutdown hooks, as we saw in part II. Bug report here – still “open”.

java.awt.Toolkit.getDefaultToolkit()

The first calll to java.awt.Toolkit.getDefaultToolkit() will spawn a new thread with the same contextClassLoader as the caller.

Javassist

I’ve seen reports on the net about PermGen errors when using older versions of Javassist for example with Hibernate. There are lots of issues in Javassist JIRA; start here and see “Similar Issues”. Since the issues have different fixed versions, you better use the latest version.

Java Cryptography Architecture (JCA) / MessageDigest initialization

According to Tomcat documentation, a Token poller thread with the same contextClassLoader as the caller, will be created “under certain conditions” when Java Cryptography Architecture is initialized, for example when a MessageDigest is created.

Java Server Faces 2

The JSF API, more precisely javax.faces.component.UIComponentBase, contains a cache that may cause classloader leaks in case the API is at the application server level. More information in this bug report.

javax.imageio / sun.awt.AppContext.getAppContext() / GWT

There will be a strong reference to the classloader of the calls to sun.awt.AppContext.getAppContext(). Note that Google Web Toolkit (GWT) will trigger this leak via its use of javax.imageio.

javax.management.remote.rmi.RMIConnectorServer.start() / sun.misc.GC.requestLatency(long)

sun.misc.GC.requestLatency(long), which is known to be called from javax.management.remote.rmi.RMIConnectorServer.start(), will cause the current contextClassLoader to be unavailable for garbage collection.

javax.security.auth.Policy

javax.security.auth.Policy.getPolicy() will keep a strong static reference to the contextClassLoader of the first calling thread.

javax.security.auth.login.Configuration

The class javax.security.auth.login.Configuration will keep a strong static reference to the contextClassLoader of Thread from which the class is loaded.

JGroups

JGroups may cause classloader leaks due to undestroyed custom ThreadGroups. At the time of this writing this issue has been fixed, while this one has not.

Logback

Logback causes classloader leaks when using SocketAppender according to this report, in which is it not really clear whether it has been fixed.

Logback also seems to have suffered from uncleared ThreadLocals (see part IV), as of this report. However that should be fixed since version 0.9.26.

JAXB

javax.xml.bind.DatatypeConverterImpl in the JAXB Reference Implementation shipped with JDK 1.6+ will keep a static reference (datatypeFactory) to a concrete subclass of javax.xml.datatype.DatatypeFactory, that is resolved when the class is loaded (which I believe happens if you have custom bindings that reference the static methods in javax.xml.bind.DatatypeConverter). It seems that if for example you have a version of Xerces inside your application, the factory method may resolve org.apache.xerces.jaxp.datatype.DatatypeFactoryImpl as the implementation to use (rather than com.sun.org.apache.xerces.internal.jaxp.datatype.DatatypeFactoryImpl shipped with the JDK), which means there will a reference from javax.xml.bind.DatatypeConverterImpl to your classloader.

Mojarra

If the Mojarra JSF implementation is provided by the application server, and you have JSF components included in your .war file, Mojarra may cause classloader leaks by keeping references to the components when application is redeployed. See bug report here.

Mozilla Rhino

The Rhino JavaScript interpreter has suffered problems related to ThreadLocals. You can read about the details in this blog post. The bug report states that it’s fixed (supposedly in 2005), but not from which version.

MVEL

MVEL expression language enginge has problems with uncleared ThreadLocals. The problem was adressed but version 2.0.19 still leaks, due to a static block adding an MVEL class as a ThreadLocal value. Current bug report here.

OpenOffice Java Uno RunTime (JURT)

The JURT (Java Uno RunTime) library in the OpenOffice UDK contains a peculiar leak. In an effort to avoid OutOfMemoryErrors(!) caused by long-running finalize methods, they created the com.sun.star.lib.util.AsynchronousFinalizer class, which holds a queue of jobs to be executed by a Thread. The problem is that this thread is never allowed to finish, as we talked about in part III. What makes this particularly tricky is that we don’t have any handle to the thread, and not least the fact that jobs are put on queue, and the thread is started if not yet running, from the finalize() method of other objects. That is, the thread may be started only when other objects are garbage collected, which may – at least in theory – not be until after your web application has been already unloaded! This problem has been reported here.

Oracle JDBC

Oracle JDBC driver, at least in some versions (such as ojdbc6), have a timeout detection thread, oracle.jdbc.driver.OracleTimeoutPollingThread, that according to reports has as its context classloader the classloader of the web application from which the first JDBC connection is requested, even if the driver itself resides on the server level. It seem this can be prevented by loading the class oracle.jdbc.driver.OracleTimeoutThreadPerVM using the system classloader before any JDBC connections are opened, which can be achieved in contextInitialized() of our ServletContextListener. (Thanks to Hal Deadman for the report!)

Serialization

Up to Java 1.4.2, serialization of classes loaded by your web apps classloader would cause reference to your classloader most likely to be kept by internal JDK caches. More info in this blog post. Bug report here.

Spring framework

Springs use of InheritableThreadLocal has caused leaks. Fixed since 1.2.9 / 2.0.1.

sun.java2d.Disposer

Loading the class sun.java2d.Disposer will spawn a new thread with the same contextClassLoader. More info.

sun.net.www.http.KeepAliveCache

In order to close reusable HTTP 1.1 connections after a timeout, sun.net.www.http.KeepAliveCache starts a thread which will keep a strong reference to the classloader from which the HTTP connection was initiated (through a ProtectionDomain). See more info in this blog post. According to Magnus Alvestads article, the thread will terminate eventually, which may cause intermittent classloader leaks. There is also no known solution, unless you have control over the server end and can add “Connection: close” to the HTTP responses.

Unified Expression Language

Up until version 2.2, the javax.el.BeanELResolver class of the Java Unified Expression Language / javax.el API kept a static strong reference cache with bean classes that had been introspected. This was reported as a leak and has since been fixed by using soft references in the cache, but at the time of this writing, there is no release including the fix. For currently released versions, the authors have been kind enough to provide a purgeBeanClasses() method to clear the cache, however this method is both private and non-static… (The JavaDoc of the method is a bit of a funny read, as it suggests the authors realized the problem, but failed to provide a proper solution.)

URLConnection

The caching mechanism of JarURLConnection can prevent JAR files to be reloaded. See this bug report. It is not entirely clear whether this will actually leak classloaders.

XML parsing

The classloader of the first thread to call DocumentBuilderFactory.newInstance().newDocumentBuilder() seems to be unable to garbage collection. Is it believed this is caused by some JVM internal bug.

Your Application Server

Yes, unfortunately the Application Server itself can be the cause of your classloader leaks. Tomcat (reports here, here, here), Jetty (here) and Resin (reports here, here, here, and more) has been know to suffer from such bugs, but there may be others as well. (There is a report on GlassFish here, but it’s not clear whether the error was actually within GlassFish.)

Pick the right Garbage Collector

It seems that for some reason, the default Garbage Collector of the Sun/Oracle JVM is not your best bet when it comes to freeing up permanent generation space. Assuming you have a multi core/multi CPU server (and who doesn’t these days?) I suggest you consider the Concurrent Mark and Sweep (CMS) Garbage Collector instead (but make sure you read up on the implications first). The CMS Garbage Collector however needs to be explicitly told to unload classes from PermGen space. Use these JVM options:

-XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled

Depending on your JVM version, you may also need -XX:+CMSPermGenSweepingEnabled. Try them out and keep an eye on the console/log file during startup to see if the JVM accepts them.

For further reading on different Garbage Collectors, see here.

Links to all parts in the series

Part I – How to find classloader leaks with Eclipse Memory Analyser (MAT)

Part II – Find and work around unwanted references

Part III – “Die Thread, die!”

Part IV – ThreadLocal dangers and why ThreadGlobal may have been a more appropriate name

Part V – Common mistakes and Known offenders

Part VI – “This means war!” (leak prevention library)

Presentation on Classloader leaks (video and slides)

  • Jules

    An excellent list. One you seem to be missing: JBoss Logging, unless configured otherwise, creates custom java.util.logging.Level objects and thus triggers the already-mentioned problem with that. Likely to become somewhat more common in future as recent versions of Hibernate depend on it.

    • http://java.jiderhamn.se Mattias Jiderhamn

      Thanks for feedback and info. Would you happen to have a reference to more details, like a bug report or forum/mailing list discussion about the issue?

      Does the problem occur when JBoss Logging is included in the application (so deploying on JBoss AS may keep you safe)?

    • Thomas

      I’ve got a whole bunch of Objects of type org.apache.cxf.BusFactory that don’t seem to be garbage collectable.

      Eclipse MAT with merge_shortest_paths gives me a tree that starts with Java.lang.Thread -> contextClassLoader -> … -> Object [640] -> BusFactory.

      Statistics on this CXF BusFactory are like this:

      Type|Name |Value

      ——————————————————————————————-

      ref |LOG |org.jboss.logmanager.Logger @ 0x9f362f8

      ref |threadBusses |java.util.WeakHashMap @ 0x9f360d0

      ref |defaultBus |org.apache.cxf.bus.extension.ExtensionManagerBus @ 0x9f47e60

      ref |DEFAULT_BUS_FACTORY |org.apache.cxf.bus.CXFBusFactory

      ref |BUS_FACTORY_PROPERTY_NAME|org.apache.cxf.bus.factory

      ——————————————————————————————-

      Is this related to JBoss Logging? Or should I start looking elsewhere. I am using the ClassLoaderLeakPreventor.

      • http://java.jiderhamn.se Mattias Jiderhamn

        Hi Tomas. I still have no more info on JBoss Logging issues than the post you replied to. Can you provide the rest of the path to GC root in your case, i.e. the “…” in your post?

        Btw what version of CXF are you using? (There has been a couple of reports on memory leaks caused by BusFactory)